2JR3 Antimicrobial Protein date Jun 20, 2007
title Antibacterial Peptide From Eggshell Matrix: Structure And Se Assembly Of Beta-Defensin Like Peptide From The Chinese Sof Turtle Eggshell
authors S.Vivekanandan, R.Lakshminarayanan, S.D.S.Jois, R.Perumal Samy, Y.Banerjee, E.O.Chi-Jin, K.W.Teo, R.M.Kini, S.Valiyaveettil
compound source
Molecule: Pelovaterin
Chain: A
 Organism_scientific: Pelodiscus Sinensis
Organism_common: Chinese Softshell Turtle
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure, self-assembly, and dual role of a beta-defensin-like peptide from the Chinese soft-shelled turtle eggshell matrix., Lakshminarayanan R, Vivekanandan S, Samy RP, Banerjee Y, Chi-Jin EO, Teo KW, Jois SD, Kini RM, Valiyaveettil S, J Am Chem Soc. 2008 Apr 9;130(14):4660-8. Epub 2008 Mar 15. PMID:18341335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (2jr3.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 2JR3
  • Original NMR restraints for 2JR3 from PDB
  • Retrieve 2JR3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JR3 from S2C, [Save to disk]
    • View 2JR3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JR3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JR3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jr3_A] [2jr3]
  • SWISS-PROT database: [P84818]
  • Domain organization of [PVAT_TRISI] by SWISSPFAM
    • Other resources with information on 2JR3
  • Community annotation for 2JR3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science