2JSP Gene Regulation date Jul 10, 2007
title The Prokaryotic Cys2his2 Zinc Finger Adopts A Novel Fold As By The Nmr Structure Of A. Tumefaciens Ros Dna Binding Doma
authors G.Malgieri
compound source
Molecule: Transcriptional Regulatory Protein Ros
Chain: A
Fragment: Dna Binding Domain
Engineered: Yes
 Organism_scientific: Agrobacterium Tumefaciens
Organism_taxid: 358
Gene: Ros
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11d
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe prokaryotic Cys2His2 zinc-finger adopts a novel fold as revealed by the NMR structure of Agrobacterium tumefaciens Ros DNA-binding domain., Malgieri G, Russo L, Esposito S, Baglivo I, Zaccaro L, Pedone EM, Di Blasio B, Isernia C, Pedone PV, Fattorusso R, Proc Natl Acad Sci U S A. 2007 Oct 30;104(44):17341-6. Epub 2007 Oct 23. PMID:17956987
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (469 Kb) [Save to disk]
  • Biological Unit Coordinates (2jsp.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2JSP
  • Original NMR restraints for 2JSP from PDB
  • Retrieve 2JSP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JSP from S2C, [Save to disk]
    • View 2JSP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JSP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JSP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jsp_A] [2jsp]
  • SWISS-PROT database: [Q04152]
  • Domain organization of [ROS_RHIRD] by SWISSPFAM
  • Domain found in 2JSP: [ZnF_C2H2 ] by SMART
    • Other resources with information on 2JSP
  • Community annotation for 2JSP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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