2JVO Rna Binding Protein date Sep 24, 2007
title Segmental Isotope Labeling Of Npl3
authors L.Skrisovska, F.H.T.Allain
compound source
Molecule: Nucleolar Protein 3
Chain: A
Fragment: Rrm 1 Domain
Synonym: Mitochondrial Targeting Suppressor 1 Protein, Nucl Polyadenylated Rna-Binding Protein 1;
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Nop3, Mts1, Nab1, Npl3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon+ Ril
Expression_system_vector_type: Vector
Expression_system_vector: Pet28 A+
methodSolution NMR
note 2JVO is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceImproved segmental isotope labeling methods for the NMR study of multidomain or large proteins: application to the RRMs of Npl3p and hnRNP L., Skrisovska L, Allain FH, J Mol Biol. 2008 Jan 4;375(1):151-64. Epub 2007 Sep 16. PMID:17936301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (404 Kb) [Save to disk]
  • Biological Unit Coordinates (2jvo.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2JVO
  • Original NMR restraints for 2JVO from PDB
  • Retrieve 2JVO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JVO from S2C, [Save to disk]
    • View 2JVO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JVO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JVO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jvo_A] [2jvo]
  • SWISS-PROT database: [Q01560]
  • Domain organization of [NOP3_YEAST] by SWISSPFAM
  • Domain found in 2JVO: [RRM ] by SMART
    • Other resources with information on 2JVO
  • Community annotation for 2JVO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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