2K9B Antibiotic date Oct 07, 2008
title Structure And Membrane Interactions Of The Antibiotic Peptid Dermadistinctin K By Multidimensional Solution And Oriented 31p Solid-State Nmr Spectroscopy
authors C.M.Moraes, R.M.Verly, J.M.Resende, C.Aisenbrey, M.P.Bemquerer, D Veloso, A.Valente, F.C.L.Almeida, B.Bechinger
compound source
Molecule: Dermadistinctin-K
Chain: A
Synonym: Dd K
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Was Prepared By Solid-Phase Synt Using Fmoc Chemistry
methodSolution NMR
ligand NH2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and membrane interactions of the antibiotic peptide dermadistinctin K by multidimensional solution and oriented 15N and 31P solid-state NMR spectroscopy., Verly RM, de Moraes CM, Resende JM, Aisenbrey C, Bemquerer MP, Pilo-Veloso D, Valente AP, Almeida FC, Bechinger B, Biophys J. 2009 Mar 18;96(6):2194-203. PMID:19289046
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (2k9b.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 2K9B
  • CSU: Contacts of Structural Units for 2K9B
  • Original NMR restraints for 2K9B from PDB
  • Retrieve 2K9B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K9B from S2C, [Save to disk]
  • View 2K9B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K9B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K9B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k9b] [2k9b_A]
  • SWISS-PROT database: [P83638]
  • Domain organization of [DDSK_PHYDS] by SWISSPFAM
  • Other resources with information on 2K9B
  • Community annotation for 2K9B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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