2KDR Viral Protein, Membrane Protein date Jan 15, 2009
title Solution Structure Of Hcv Ns4b(227-254)
authors R.Montserret, F.Penin
compound source
Molecule: Non-Structural Protein 4b
Chain: X
Fragment: Unp Residues 1938-1965
Synonym: Ns4b, P27
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Hepatitis C Virus
Organism_taxid: 11103
Other_details: The Peptide Was Synthesized By Solid-Phase S
methodSolution NMR
note 2KDR is a representative structure
Primary referenceAn Amphipathic {alpha}-Helix at the C Terminus of Hepatitis C Virus Nonstructural Protein 4B Mediates Membrane Association., Gouttenoire J, Montserret R, Kennel A, Penin F, Moradpour D, J Virol. 2009 Aug 19. PMID:19692468
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (2kdr.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 2KDR
  • Original NMR restraints for 2KDR from PDB
  • Retrieve 2KDR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KDR from S2C, [Save to disk]
    • View 2KDR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KDR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KDR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kdr_X] [2kdr]
  • SWISS-PROT database: [P27958]
  • Domain organization of [POLG_HCVH] by SWISSPFAM
    • Other resources with information on 2KDR
  • Community annotation for 2KDR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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