2KES Protein Binding date Feb 02, 2009
title Solution Structure Of The Coiled-Coil Domain Of Synphilin-1
authors Y.Y.Xie, C.J.Zhou, Z.R.Zhou, H.Y.Hu
compound source
Molecule: Synphilin-1
Chain: A
Fragment: Coiled-Coil Domain, Residues 512-557
Synonym: Alpha-Synuclein-Interacting Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sncaip
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet-32m
methodSolution NMR
note 2KES is a representative structure
Primary referenceInteraction with synphilin-1 promotes inclusion formation of alpha-synuclein: mechanistic insights and pathological implication., Xie YY, Zhou CJ, Zhou ZR, Hong J, Che MX, Fu QS, Song AX, Lin DH, Hu HY, FASEB J. 2010 Jan;24(1):196-205. Epub 2009 Sep 17. PMID:19762560
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (2kes.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 2KES
  • Original NMR restraints for 2KES from PDB
  • Retrieve 2KES in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KES from S2C, [Save to disk]
    • View 2KES in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KES
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KES, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kes] [2kes_A]
  • SWISS-PROT database: [Q9Y6H5]
  • Domain organization of [SNCAP_HUMAN] by SWISSPFAM
    • Other resources with information on 2KES
  • Community annotation for 2KES at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science