2KGO Structural Genomics, Unknown Function date Mar 13, 2009
title Solution Nmr Structure Of Zn Finger Protein Ybil From Escher Coli. Nesg Target Et107, Ocsp Target Ec0402
authors A.Gutmanas, A.Yee, A.Lemak, C.Fares, V.Guido, C.H.Arrowsmith, Nort Structural Genomics Consortium (Nesg), Ontario Centre For St Proteomics (Ocsp)
compound source
Molecule: Uncharacterized Protein Ybii
Chain: A
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Gene: B0803, Jw0788, Ybii, Ybil
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_variant: Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (438 Kb) [Save to disk]
  • Biological Unit Coordinates (2kgo.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 2KGO
  • CSU: Contacts of Structural Units for 2KGO
  • Original NMR restraints for 2KGO from PDB
  • Retrieve 2KGO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KGO from S2C, [Save to disk]
    • View 2KGO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KGO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KGO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kgo_A] [2kgo]
  • SWISS-PROT database: [P41039]
  • Domain organization of [YBII_ECOLI] by SWISSPFAM
    • Other resources with information on 2KGO
  • Community annotation for 2KGO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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