2KOC Rna date Sep 17, 2009
title Nmr Solution Structure Of A 14-Mer Hairpin Rna With Cuucgg T
authors S.Nozinovic, B.Fuertig, H.R.A.Jonker, C.Richter, H.Schwalbe
compound source
Molecule: Rna (5'-R(Pgpgpcpapcpupupcpgpgpupgpc
Chain: A
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
Primary referenceHigh-resolution NMR structure of an RNA model system: the 14-mer cUUCGg tetraloop hairpin RNA., Nozinovic S, Furtig B, Jonker HR, Richter C, Schwalbe H, Nucleic Acids Res. 2009 Nov 11. PMID:19906714
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (2koc.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 2KOC
  • Original NMR restraints for 2KOC from PDB
  • Retrieve 2KOC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KOC from S2C, [Save to disk]
    • View 2KOC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KOC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KOC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2koc_A] [2koc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2KOC
  • Community annotation for 2KOC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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