2KTO Antibiotic date Feb 05, 2010
title Spatial Structure Of Lch-Beta Peptide From Two-Component Lan Lichenicidin Vk21
authors K.S.Mineev, Z.O.Shenkarev, T.V.Ovchinnikova, A.S.Arseniev
compound source
Molecule: Lchb
Chain: A
Synonym: Lantibiotic Lichenicidin Vk21 A2, Lcha2
 Organism_scientific: Bacillus Licheniformis
Organism_taxid: 279010
Strain: Vk21
methodSolution NMR
ligand 2KT, DAL, DBB, DBU, DHA enzyme
Primary referenceIsolation, structure elucidation, and synergistic antibacterial activity of a novel two-component lantibiotic lichenicidin from Bacillus licheniformis VK21., Shenkarev ZO, Finkina EI, Nurmukhamedova EK, Balandin SV, Mineev KS, Nadezhdin KD, Yakimenko ZA, Tagaev AA, Temirov YV, Arseniev AS, Ovchinnikova TV, Biochemistry. 2010 Jun 25. PMID:20578714
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (2kto.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 2KTO
  • CSU: Contacts of Structural Units for 2KTO
  • Original NMR restraints for 2KTO from PDB
  • Retrieve 2KTO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KTO from S2C, [Save to disk]
    • View 2KTO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KTO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KTO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kto_A] [2kto]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2KTO
  • Community annotation for 2KTO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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