2KTT Dna date Feb 08, 2010
title Solution Structure Of A Covalently Bound Pyrrolo[2,1-C][1, 4]Benzodiazepine-Benzimidazole Hybrid To A 10mer Dna Duplex
authors M.Rettig, M.Weingarth, W.Langel, A.Kamal, P.P.Kumar, K.Weisz
compound source
Molecule: 5'-D(Apapcpapaptptpgptpt)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
ligand PBH enzyme
Primary referenceSolution structure of a covalently bound pyrrolo[2,1-c][1,4]benzodiazepine-benzimidazole hybrid to a 10mer DNA duplex., Rettig M, Weingarth M, Langel W, Kamal A, Kumar PP, Weisz K, Biochemistry. 2009 Dec 29;48(51):12223-32. PMID:19911838
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (2ktt.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 2KTT
  • CSU: Contacts of Structural Units for 2KTT
  • Original NMR restraints for 2KTT from PDB
  • Retrieve 2KTT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KTT from S2C, [Save to disk]
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    • Visual 3D analysis of 2KTT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KTT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ktt_B] [2ktt] [2ktt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2KTT
  • Community annotation for 2KTT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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