2KTZ Rna date Feb 10, 2010
title Inhibitor Induced Structural Change In The Hcv Ires Domain I
authors R.B.Paulsen, P.P.Seth, E.E.Swayze, R.H.Griffey, J.J.Skalicky, T.E Iii, D.R.Davis
compound source
Molecule: Hcv Ires Domain Iia Rna
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Hepatitis C Virus
Organism_common: Hcv
Organism_taxid: 11103
Other_details: T7 Polymerase
methodSolution NMR
ligand ISH enzyme
Primary referenceInhibitor-induced structural change in the HCV IRES domain IIa RNA., Paulsen RB, Seth PP, Swayze EE, Griffey RH, Skalicky JJ, Cheatham TE 3rd, Davis DR, Proc Natl Acad Sci U S A. 2010 Apr 20;107(16):7263-8. Epub 2010 Apr 1. PMID:20360559
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (2ktz.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2KTZ
  • CSU: Contacts of Structural Units for 2KTZ
  • Original NMR restraints for 2KTZ from PDB
  • Retrieve 2KTZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KTZ from S2C, [Save to disk]
    • View 2KTZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KTZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KTZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ktz_A] [2ktz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2KTZ
  • Community annotation for 2KTZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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