2KUP Signaling Protein Oncoprotein date Feb 24, 2010
title Solution Structure Of The Complex Of The Ptb Domain Of Snt-2 Residue Peptide (Aa 1571-1589) Of Halk
authors H.Li, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama
compound source
Molecule: Fibroblast Growth Factor Receptor Substrate 3
Chain: A
Fragment: Ptb Domain
Synonym: Fgfr Substrate 3, Suc1-Associated Neurotrophic Fac 2, Snt-2, Fgfr-Signaling Adaptor Snt2;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell-Free Synthesis
Expression_system_vector_type: Vector
Expression_system_vector: P060320-18

Molecule: 19-Residue Peptide From Alk Tyrosine Kinase Recep
Chain: B
Synonym: Halk, Anaplastic Lymphoma Kinase
Engineered: Yes
Synthetic: Yes
Other_details: Chemically Synthesized
methodSolution NMR
Primary referenceStructural basis for the recognition of nucleophosmin-anaplastic lymphoma kinase oncoprotein by the phosphotyrosine binding domain of Suc1-associated neurotrophic factor-induced tyrosine-phosphorylated target-2., Koshiba S, Li H, Motoda Y, Tomizawa T, Kasai T, Tochio N, Yabuki T, Harada T, Watanabe S, Tanaka A, Shirouzu M, Kigawa T, Yamamoto T, Yokoyama S, J Struct Funct Genomics. 2010 May 8. PMID:20454865
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (864 Kb) [Save to disk]
  • Biological Unit Coordinates (2kup.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 2KUP
  • Original NMR restraints for 2KUP from PDB
  • Retrieve 2KUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KUP from S2C, [Save to disk]
    • View 2KUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KUP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KUP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kup_B] [2kup] [2kup_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2KUP: [IRS] [PTBI ] by SMART
    • Other resources with information on 2KUP
  • Community annotation for 2KUP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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