2L2Y Antibiotic date Aug 27, 2010
title Thiostrepton, Epimer Form Of Residue 9
authors H.R.A.Jonker, S.Baumann, A.Wolf, S.Schoof, F.Hiller, K.W.Schulte, K.N.Kirschner, H.Schwalbe, H.D.Arndt
compound source
Molecule: Thiostrepton
Chain: A
Fragment: Residues 1-16
Synonym: Alaninamide, Bryamycin, Gargon, Thiactin
Mutation: Yes
 Organism_scientific: Streptomyces Azureus
Organism_taxid: 146537
methodSolution NMR
ligand BB9, DBU, DHA, MH6, NH2, QUA, TS9 enzyme
Primary referenceNMR structures of thiostrepton derivatives for characterization of the ribosomal binding site., Jonker HR, Baumann S, Wolf A, Schoof S, Hiller F, Schulte KW, Kirschner KN, Schwalbe H, Arndt HD, Angew Chem Int Ed Engl. 2011 Mar 28;50(14):3308-12. doi: 10.1002/anie.201003582. , Epub 2011 Mar 1. PMID:21365717
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2l2y.pdb1.gz) 4 Kb
  • LPC: Ligand-Protein Contacts for 2L2Y
  • CSU: Contacts of Structural Units for 2L2Y
  • Original NMR restraints for 2L2Y from PDB
  • Retrieve 2L2Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L2Y from S2C, [Save to disk]
    • View 2L2Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2L2Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L2Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l2y_A] [2l2y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2L2Y
  • Community annotation for 2L2Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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