2L3I Oxki4a, spider derived antimicrobial peptide date
authors Vassilevski, A.A., Dubovskii, P.V., Samsonova, O.V., Egorova, N.S., Kozlov, S.A., Feofanov, A.V., Arseniev, A.S., Grishin, E.V.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
note 2L3I is a representative structure
Primary referenceNovel lynx spider toxin shares common molecular architecture with defense peptides from frog skin., Dubovskii PV, Vassilevski AA, Samsonova OV, Egorova NS, Kozlov SA, Feofanov AV, Arseniev AS, Grishin EV, FEBS J. 2011 Sep 20. doi: 10.1111/j.1742-4658.2011.08361.x. PMID:21933345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk]
  • Biological Unit Coordinates (2l3i.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 2L3I
  • Original NMR restraints for 2L3I from PDB
  • Retrieve 2L3I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L3I from S2C, [Save to disk]
    • View 2L3I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2L3I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L3I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l3i_A] [2l3i]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2L3I
  • Community annotation for 2L3I at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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