2LIP Hydrolase date Dec 13, 1996
title Pseudomonas Lipase Open Conformation
authors J.D.Schrag, M.Cygler
compound source
Molecule: Lipase
Chain: A
Synonym: Triacylglycerol Hydrolase
Ec: 3.1.1.3
 Organism_scientific: Burkholderia Cepacia
Organism_taxid: 292
Other_details: Commercial Prep From Genzyme Corporation
symmetry Space Group: C 1 2 1
R_factor 0.163 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.500 47.340 85.220 90.00 121.25 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CA enzyme Hydrolase E.C.3.1.1.3 BRENDA
related structures by homologous chain: 1OIL, 3LIP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe open conformation of a Pseudomonas lipase., Schrag JD, Li Y, Cygler M, Lang D, Burgdorf T, Hecht HJ, Schmid R, Schomburg D, Rydel TJ, Oliver JD, Strickland LC, Dunaway CM, Larson SB, Day J, McPherson A, Structure 1997 Feb 15;5(2):187-202. PMID:9032074
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2lip.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2LIP
  • CSU: Contacts of Structural Units for 2LIP
  • Likely Quarternary Molecular Structure file(s) for 2LIP
  • Structure Factors (102 Kb)
  • Retrieve 2LIP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LIP from S2C, [Save to disk]
  • Re-refined 2lip structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2LIP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LIP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LIP, from MSDmotif at EBI
  • Genome occurence of 2LIP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2lip__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lip] [2lip_A]
  • SWISS-PROT database: [P22088]
  • Domain organization of [LIP_BURCE] by SWISSPFAM
    • Other resources with information on 2LIP
  • Community annotation for 2LIP at PDBWiki (http://pdbwiki.org)
  • LED, table of lipase structures from Lipase Engineering Database.
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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