2LJ7 Antimicrobial Protein date Sep 07, 2011
title 3d Solution Structure Of Plant Defensin Lc-Def
authors Z.Shenkarev, K.Mineev, A.Gizatullina
compound source
Molecule: Defensin Lc-Def
Chain: A
Engineered: Yes
 Organism_scientific: Lens Culinaris Subsp. Culinaris
Organism_common: Cultivated Lentil
Organism_taxid: 362247
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pgem-T
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHeterologous expression and solution structure of defensin from lentil Lens culinaris., Shenkarev ZO, Gizatullina AK, Finkina EI, Alekseeva EA, Balandin SV, Mineev KS, Arseniev AS, Ovchinnikova TV, Biochem Biophys Res Commun. 2014 Aug 22;451(2):252-7. doi:, 10.1016/j.bbrc.2014.07.104. Epub 2014 Jul 30. PMID:25086358
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]
  • Biological Unit Coordinates (2lj7.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 2LJ7
  • Original NMR restraints for 2LJ7 from PDB
  • Retrieve 2LJ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LJ7 from S2C, [Save to disk]
    • View 2LJ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LJ7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LJ7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lj7_A] [2lj7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LJ7: [Knot1 ] by SMART
    • Other resources with information on 2LJ7
  • Community annotation for 2LJ7 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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