2LK0 Rna Binding Protein date Sep 30, 2011
title Solution Structure And Binding Studies Of The Ranbp2-Type Zi Of Rbm5
authors B.Farina, M.Pellecchia
compound source
Molecule: Rna-Binding Protein 5
Chain: A
Fragment: Ranbp2-Type Zinc Finger Residues 181-210
Synonym: Protein G15, Putative Tumor Suppressor Luca15, Rna Motif Protein 5, Renal Carcinoma Antigen Ny-Ren-9;
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand ACE, NH2, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTargeting Zinc Finger Domains with Small Molecules: Solution Structure and Binding Studies of the RanBP2-Type Zinc Finger of RBM5., Farina B, Fattorusso R, Pellecchia M, Chembiochem. 2011 Dec 16;12(18):2837-45. doi: 10.1002/cbic.201100582. PMID:22162216
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (2lk0.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 2LK0
  • CSU: Contacts of Structural Units for 2LK0
  • Original NMR restraints for 2LK0 from PDB
  • Retrieve 2LK0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LK0 from S2C, [Save to disk]
    • View 2LK0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LK0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LK0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lk0] [2lk0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LK0: [ZnF_RBZ ] by SMART
    • Other resources with information on 2LK0
  • Community annotation for 2LK0 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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