2LY5 Plant Protein date Sep 12, 2012
title Refined Solution Structure Of Recombinant Brazzein
authors C.C.Cornilescu, G.Cornilescu, M.Tonelli, J.L.Markley, F.M.Assadi
compound source
Molecule: Defensin-Like Protein
Chain: A
Synonym: Brazzein
Engineered: Yes
 Organism_scientific: Pentadiplandra Brazzeana
Organism_taxid: 43545
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24d
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTemperature-dependent conformational change affecting Tyr11 and sweetness loops of brazzein., Cornilescu CC, Cornilescu G, Rao H, Porter SF, Tonelli M, Derider ML, Markley JL, Assadi-Porter FM, Proteins. 2013 Jan 24. doi: 10.1002/prot.24259. PMID:23349025
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (2ly5.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 2LY5
  • Original NMR restraints for 2LY5 from PDB
  • Retrieve 2LY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LY5 from S2C, [Save to disk]
    • View 2LY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LY5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LY5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ly5_A] [2ly5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2LY5
  • Community annotation for 2LY5 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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