2MG1 Viral Protein date Oct 24, 2013
title Nmr Assignment And Structure Of A Peptide Derived From The T Membrane Region Of Hiv-1 Gp41 In The Presence Of Hexafluoroisopropanol
authors S.Serrano, B.Apellaniz, N.L.Huarte, J.L.Nieva, M.A.Jimenez
compound source
Molecule: Transmembrane Protein Gp41
Chain: A
Synonym: Tm, Glycoprotein 41, Gp41
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_common: Hiv-1
Organism_taxid: 11706
methodSolution NMR
Primary referenceThe Atomic Structure of the HIV-1 gp41 Transmembrane Domain and its Connection to the Inmmunogenic Membrane-proximal External Region., Apellaniz B, Rujas E, Serrano S, Morante K, Tsumoto K, Caaveiro JM, Jimenez MA, Nieva JL, J Biol Chem. 2015 Mar 18. pii: jbc.M115.644351. PMID:25787074
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (2mg1.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 2MG1
  • Original NMR restraints for 2MG1 from PDB
  • Retrieve 2MG1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MG1 from S2C, [Save to disk]
    • View 2MG1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2MG1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MG1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mg1_A] [2mg1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2MG1
  • Community annotation for 2MG1 at PDBWiki (http://pdbwiki.org)

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