2MS5 Rna date Jul 23, 2014
title Structural Dynamics Of Double-Helical Rna Having Cag Motif
authors A.Kumar, A.Tawani
compound source
Molecule: Rna_(5'-R(Pcpcpgpcpapgpcpgpg)-3')
Chain: S, A
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
Primary referenceStructural Insights Reveal the Dynamics of the Repeating r(CAG) Transcript Found in Huntington's Disease (HD) and Spinocerebellar Ataxias (SCAs)., Tawani A, Kumar A, PLoS One. 2015 Jul 6;10(7):e0131788. doi: 10.1371/journal.pone.0131788., eCollection 2015. PMID:26148061
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (2ms5.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 2MS5
  • Original NMR restraints for 2MS5 from PDB
  • Retrieve 2MS5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MS5 from S2C, [Save to disk]
    • View 2MS5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2MS5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MS5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ms5_S] [2ms5] [2ms5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2MS5
  • Community annotation for 2MS5 at PDBWiki (http://pdbwiki.org)

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