2N1C Antimicrobial Peptide date Mar 27, 2015
title Structure Of Pvhct, An Antimicrobial Peptide From Shrimp Lit Vannamei
authors V.W.Petit, J.L.Rolland, A.Blond, C.Djediat, J.Peduzzi, C.Goulard, E.Bachere, J.Dupont, D.Destoumieux-Garzon, S.Rebuffat
compound source
Molecule: Hemocyanin Subunit L2
Chain: A
Fragment: C-Terminal Region (Unp Residues 654-676)
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Litopenaeus Vannamei
Organism_common: White Pacific Shrimp,White Shrimp
Organism_taxid: 6689
methodSolution NMR
Primary referenceA hemocyanin-derived antimicrobial peptide from the penaeid shrimp adopts an alpha-helical structure that specifically permeabilizes fungal membranes., Petit VW, Rolland JL, Blond A, Cazevieille C, Djediat C, Peduzzi J, Goulard C, Bachere E, Dupont J, Destoumieux-Garzon D, Rebuffat S, Biochim Biophys Acta. 2016 Mar;1860(3):557-68. doi: 10.1016/j.bbagen.2015.12.010., Epub 2015 Dec 17. PMID:26708991
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (2n1c.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 2N1C
  • Original NMR restraints for 2N1C from PDB
  • Retrieve 2N1C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N1C from S2C, [Save to disk]
    • View 2N1C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2N1C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2N1C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n1c_A] [2n1c]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2N1C
  • Community annotation for 2N1C at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science