2N2O Rna date May 11, 2015
title Structure Of Murine Tumour Necrosis Factor Alpha Cde Rna
authors L.Codutti, K.Leppek, J.Zalesak, V.Windeisen, P.Masiewicz, G.Stoec T.Carlomagno
compound source
Molecule: Rna (5'- R(Pgpcpapupgpupupupupcpupgpupgpapapapapc U)-3');
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
methodSolution NMR
Primary referenceA Distinct, Sequence-Induced Conformation Is Required for Recognition of the Constitutive Decay Element RNA by Roquin., Codutti L, Leppek K, Zalesak J, Windeisen V, Masiewicz P, Stoecklin G, Carlomagno T, Structure. 2015 Jul 3. pii: S0969-2126(15)00225-7. doi:, 10.1016/j.str.2015.06.001. PMID:26165594
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (2n2o.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 2N2O
  • Original NMR restraints for 2N2O from PDB
  • Retrieve 2N2O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N2O from S2C, [Save to disk]
  • View 2N2O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2N2O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n2o_A] [2n2o]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2N2O
  • Community annotation for 2N2O at PDBWiki (http://pdbwiki.org)

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