2N9R Antimicrobial Protein date Dec 03, 2015
title Novel Antimicrobial Peptide Padbs1r1 Designed From The Ribos Protein L39e From Pyrobaculum Aerophilum Using Bioinformati
authors L.S.F.Irazazabal, W.F.Porto, E.S.F.Alves, C.O.Matos, R.E.W.Hanco E.Haney, S.M.Ribeiro, L.M.Liao, A.S.F.Ladram, O.L.Franco
compound source
Molecule: Antimicrobial Peptide Padbs1r1
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Designed From The Ribosomal Protein L39e Fro Pyrobaculum Aerophilum Using Bioinformatics
methodSolution NMR
ligand NH2 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2n9r.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 2N9R
  • CSU: Contacts of Structural Units for 2N9R
  • Original NMR restraints for 2N9R from PDB
  • Retrieve 2N9R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N9R from S2C, [Save to disk]
  • View 2N9R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2N9R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n9r] [2n9r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2N9R
  • Community annotation for 2N9R at PDBWiki (http://pdbwiki.org)

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