2NNT Protein Fibril date Oct 24, 2006
title General Structural Motifs Of Amyloid Protofilaments
authors N.Ferguson, J.Becker, H.Tidow, S.Tremmel, T.D.Sharpe, G.Krause, J. M.Petrovich, J.Berriman, H.Oschkinat, A.R.Fersht
compound source
Molecule: Transcription Elongation Regulator 1
Chain: A, B, C, D
Fragment: Second Ww Domain
Synonym: Tata Box-Binding Protein- Associated Factor 2s, Transcription Factor Ca150;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tcerg1, Ca150, Taf2s
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgat2
methodSolid-State NMR
note 2NNT is a representative structure
Primary referenceGeneral structural motifs of amyloid protofilaments., Ferguson N, Becker J, Tidow H, Tremmel S, Sharpe TD, Krause G, Flinders J, Petrovich M, Berriman J, Oschkinat H, Fersht AR, Proc Natl Acad Sci U S A. 2006 Oct 31;103(44):16248-53. Epub 2006 Oct 23. PMID:17060612
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (345 Kb) [Save to disk]
  • Biological Unit Coordinates (2nnt.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 2NNT
  • Retrieve 2NNT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NNT from S2C, [Save to disk]
    • View 2NNT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2NNT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NNT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nnt_A] [2nnt] [2nnt_B] [2nnt_C] [2nnt_D]
  • SWISS-PROT database: [O14776]
  • Domain organization of [TCRG1_HUMAN] by SWISSPFAM
  • Domain found in 2NNT: [WW ] by SMART
    • Other resources with information on 2NNT
  • Community annotation for 2NNT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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