2NPV Surface Active Protein date Oct 30, 2006
title Structure And Dynamics Of Surfactin Studied By Nmr In Micell
authors P.Tsan, L.Volpon, J.M.Lancelin
compound source
Molecule: Ellvdll
Chain: A
Other_details: This Biosurfactant Is A Cyclic Lipopetide Wi Amino-Acids (Glu-Leu-Leu-Val-Asp-Leu-Leu) Of Configuration And One Beta-Amino Fatty Acid.
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Other_details: This Peptide That Contained Amino Acids With Configuration D Was Purified From Bacteria. For Such Peptid Bacteria Are Using Multienzymatic Systems That Racemize Ami And Catalyze The Formation Of Peptidic Bond, As For The Syn Peptidoglycans For Example.
methodSolution NMR
ligand BFC, DLE enzyme
Primary referenceStructure and dynamics of surfactin studied by NMR in micellar media., Tsan P, Volpon L, Besson F, Lancelin JM, J Am Chem Soc. 2007 Feb 21;129(7):1968-77. Epub 2007 Jan 26. PMID:17256853
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2npv.pdb1.gz) 3 Kb
  • LPC: Ligand-Protein Contacts for 2NPV
  • CSU: Contacts of Structural Units for 2NPV
  • Retrieve 2NPV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NPV from S2C, [Save to disk]
    • View 2NPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2NPV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NPV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2npv_A] [2npv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2NPV
  • Community annotation for 2NPV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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