2O6N De Novo Protein date Dec 07, 2006
title Rh4b: Designed Right-Handed Coiled Coil Tetramer With All Bi Amino Acids
authors M.Sales, T.Alber
compound source
Molecule: Rh4b Designed Peptide
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: Chemical Peptide Synthesis
symmetry Space Group: P 4 21 2
R_factor 0.115 R_Free 0.132
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.356 38.356 49.679 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand ACE, CGU, NH2, YB2 enzyme
Primary referenceStructure of a designed, right-handed coiled-coil tetramer containing all biological amino acids., Sales M, Plecs JJ, Holton JM, Alber T, Protein Sci. 2007 Oct;16(10):2224-32. Epub 2007 Aug 31. PMID:17766380
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2o6n.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 2O6N
  • CSU: Contacts of Structural Units for 2O6N
  • Likely Quarternary Molecular Structure file(s) for 2O6N
  • Structure Factors (292 Kb)
  • Retrieve 2O6N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O6N from S2C, [Save to disk]
  • Re-refined 2o6n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O6N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O6N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O6N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o6n_A] [2o6n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2O6N
  • Community annotation for 2O6N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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