2O8H	Hydrolase	date	Dec 12, 2006
title	Crystal Structure Of The Catalytic Domain Of Rat Phosphodies
authors	J.Pandit, E.S.Marr
compound		source
Molecule: Phosphodiesterase-10a Chain: A Fragment: Catalytic Domain Synonym: Pde10a2 Ec: 3.1.4.17 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Pde10a, Pde10a Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf21 Expression_system_vector_type: Baculovirus
symmetry	Space Group: H 3	R_factor 0.224 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.622 120.622 82.143 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	227, MG, ZN BindingDB	enzyme	Hydrolase E.C.3.1.4.17 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of a series of 6,7-dimethoxy-4-pyrrolidylquinazoline PDE10A inhibitors., Chappie TA, Humphrey JM, Allen MP, Estep KG, Fox CB, Lebel LA, Liras S, Marr ES, Menniti FS, Pandit J, Schmidt CJ, Tu M, Williams RD, Yang FV, J Med Chem. 2007 Jan 25;50(2):182-5. PMID:17228859

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (2o8h.pdb1.gz) 57 Kb LPC: Ligand-Protein Contacts for 2O8H CSU: Contacts of Structural Units for 2O8H Likely Quarternary Molecular Structure file(s) for 2O8H Structure Factors (320 Kb) Retrieve 2O8H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2O8H from S2C, [Save to disk] Re-refined 2o8h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2O8H in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2O8H

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2O8H, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2o8h_A] [2o8h] SWISS-PROT database: [Q9QYJ6] Domain organization of [PDE10_RAT] by SWISSPFAM Domain found in 2O8H: [HDc ] by SMART

Other resources with information on 2O8H

Community annotation for 2O8H at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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