2O8L Hydrolase date Dec 12, 2006
title Structure Of V8 Protease From Staphylococcus Aureus
authors L.T.J.Delbaere, L.Prasad, Y.Leduc
compound source
Molecule: V8 Protease
Chain: A
Synonym: Glutamyl Endopeptidase; Staphylococcal Serine Prot Proteinase; Endoproteinase Glu-C;
Ec: 3.4.21.19
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Strain: Mu50
Atcc: 700699
symmetry Space Group: P 65 2 2
R_factor 0.188 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.430 59.430 214.010 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand K enzyme Hydrolase E.C.3.4.21.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of a universally employed enzyme: V8 protease from Staphylococcus aureus., Prasad L, Leduc Y, Hayakawa K, Delbaere LT, Acta Crystallogr D Biol Crystallogr 2004 Feb;60(Pt 2):256-9. Epub 2004 Jan, 23. PMID:14747701
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (2o8l.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2O8L
  • CSU: Contacts of Structural Units for 2O8L
  • Likely Quarternary Molecular Structure file(s) for 2O8L
  • Structure Factors (491 Kb)
  • Retrieve 2O8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O8L from S2C, [Save to disk]
  • Re-refined 2o8l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O8L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O8L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o8l] [2o8l_A]
  • SWISS-PROT database: [Q99V45]
  • Domain organization of [SSPA_STAAM] by SWISSPFAM
  • Domain found in 2O8L: [Tryp_SPc ] by SMART
    • Other resources with information on 2O8L
  • Community annotation for 2O8L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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