2O9Q Hydrolase date Dec 14, 2006
title The Crystal Structure Of Bovine Trypsin Complexed With A Sma Inhibition Peptide Orb2k
authors J.Li, C.Zhang, X.Xu, J.Wang, W.Gong, R.Lai
compound source
Molecule: Cationic Trypsin
Chain: A
Fragment: Cationic Trypsin
Synonym: Beta-Trypsin
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas

Molecule: Orb2k
Chain: C
Engineered: Yes

Synthetic: Yes
Other_details: The Small Peptide Orb2k Was Synthesized By A Scientific (Xi An) Inc. (Xi An, China), And Confirmed Purit Than 95% By Hplc And Maldi-Tof Mass Spectrometry.
symmetry Space Group: P 21 21 21
R_factor 0.155 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.016 63.451 69.684 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CA, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2o9q.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 2O9Q
  • CSU: Contacts of Structural Units for 2O9Q
  • Likely Quarternary Molecular Structure file(s) for 2O9Q
  • Structure Factors (149 Kb)
  • Retrieve 2O9Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O9Q from S2C, [Save to disk]
  • Re-refined 2o9q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O9Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O9Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O9Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o9q] [2o9q_C] [2o9q_A]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 2O9Q: [Tryp_SPc ] by SMART
  • Other resources with information on 2O9Q
  • Community annotation for 2O9Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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