2OC5 Crystal structure of a ferritin-like protein (pmt1231) from prochlorococcus marinus str. mit 9313 at 1.68 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.2
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.68
ligand ACT, FE, MSE, UNL enzyme
note 2OC5 is a representative structure
Gene NP
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2oc5.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2OC5
  • CSU: Contacts of Structural Units for 2OC5
  • Likely Quarternary Molecular Structure file(s) for 2OC5
  • Structure Factors (9704 Kb)
  • Retrieve 2OC5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OC5 from S2C, [Save to disk]
  • Re-refined 2oc5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OC5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OC5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OC5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m2oc5, region C:45-119 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oc5] [2oc5_A]
  • SWISS-PROT database: [Q7V6D4]
  • Domain organization of [Q7V6D4_PROMM] by SWISSPFAM
  • Other resources with information on 2OC5
  • Community annotation for 2OC5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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