2OCV	Hydrolase	date	Dec 21, 2006
title	Structural Basis Of Na+ Activation Mimicry In Murine Thrombi
authors	F.Marino, Z.Chen, C.E.Ergenekan, L.A.Bush, F.S.Mathews, E.Di Cera
compound		source
Molecule: Thrombin Chain: A Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: F2, Cf2 Expression_system_cell_line: Hamster Kidney Cell
Molecule: Thrombin Chain: B Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: F2, Cf2 Expression_system_cell_line: Hamster Kidney Cell
symmetry	Space Group: C 1 2 1	R_factor 0.186 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 136.770 47.510 43.180 90.00 95.54 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural basis of na+ activation mimicry in murine thrombin., Marino F, Chen ZW, Ergenekan CE, Bush-Pelc LA, Mathews FS, Di Cera E, J Biol Chem. 2007 Jun 1;282(22):16355-61. Epub 2007 Apr 10. PMID:17428793

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (2ocv.pdb1.gz) 51 Kb Biological Unit Coordinates (2ocv.pdb2.gz) 101 Kb LPC: Ligand-Protein Contacts for 2OCV CSU: Contacts of Structural Units for 2OCV Likely Quarternary Molecular Structure file(s) for 2OCV Structure Factors (128 Kb) Retrieve 2OCV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OCV from S2C, [Save to disk] Re-refined 2ocv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OCV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OCV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OCV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ocv_A] [2ocv] [2ocv_B] SWISS-PROT database: [P19221] Domain organization of [THRB_MOUSE] by SWISSPFAM Domain found in 2OCV: [Tryp_SPc ] by SMART

Other resources with information on 2OCV

Community annotation for 2OCV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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