2OGR	Fluorescent Protein	date	Jan 08, 2007
title	Crystal Structure Of Yellow Fluorescent Protein From Zoanthu 1.8 A Resolution
authors	N.V.Pletneva, S.V.Pletnev, T.V.Tikhonova, V.Z.Pletnev
compound		source
Molecule: Fluorescent Protein Fp538 Chain: A, B, C, D Engineered: Yes		Organism_scientific: Zoanthus Sp. Organism_taxid: 105402 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe30-Zfp538
symmetry	Space Group: P 21 21 21	R_factor 0.184 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.343 106.541 115.674 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	CH7, NFA	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	[Three-dimensional structure of yellow fluorescent protein zYFP538 from Zoanthus sp. at the resolution 1.8 angstrom], Pletneva NV, Pletnev SV, Chudakov DM, Tikhonova TV, Popov VO, Martynov VI, Wlodawer A, Dauter Z, Pletnev VZ, Bioorg Khim. 2007 Jul-Aug;33(4):421-30. PMID:17886433

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk] Biological Unit Coordinates (2ogr.pdb1.gz) 150 Kb LPC: Ligand-Protein Contacts for 2OGR CSU: Contacts of Structural Units for 2OGR Likely Quarternary Molecular Structure file(s) for 2OGR Structure Factors (738 Kb) Retrieve 2OGR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OGR from S2C, [Save to disk] Re-refined 2ogr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OGR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OGR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OGR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ogr_D] [2ogr_A] [2ogr] [2ogr_B] [2ogr_C] SWISS-PROT database: [Q9U6Y4] Domain organization of [GFPL2_ZOASP] by SWISSPFAM

Other resources with information on 2OGR

Community annotation for 2OGR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---