2ONU Ligase date Jan 24, 2007
title Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330 Homologue Of Human Ube2h
authors A.Dong, J.Lew, L.Lin, A.Hassanali, Y.Zhao, G.Senisterra, G.Wasney, I.Kozieradzki, A.Bochkarev, C.H.Arrowsmith, A.M.Edwards, M.Sund J.Weigelt, R.Hui, S.J.Brokx, Structural Genomics Consortium (S
compound source
Molecule: Ubiquitin-Conjugating Enzyme, Putative
Chain: A
Ec: 6.3.2.19
Engineered: Yes
 Organism_scientific: Plasmodium Falciparum
Organism_taxid: 36329
Strain: 3d7
Gene: Pf10_0330
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Rosetta-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15-Tev-Lic Derived From Pet15
symmetry Space Group: P 43 21 2
R_factor 0.213 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.821 52.821 206.886 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.38 Å
ligand PG4 enzyme Ligase E.C.6.3.2.19 BRENDA
Gene PF10
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (2onu.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 2ONU
  • CSU: Contacts of Structural Units for 2ONU
  • Likely Quarternary Molecular Structure file(s) for 2ONU
  • Structure Factors (92 Kb)
  • Retrieve 2ONU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ONU from S2C, [Save to disk]
  • Re-refined 2onu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2ONU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ONU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ONU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2onu] [2onu_A]
  • SWISS-PROT database: [Q8IJ70]
  • Domain organization of [Q8IJ70_PLAF7] by SWISSPFAM
  • Domain found in 2ONU: [UBCc ] by SMART
    • Other resources with information on 2ONU
  • Community annotation for 2ONU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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