2OQF Hydrolase date Jan 31, 2007
title Structure Of A Synthetic, Non-Natural Analogue Of Rnase A: [ D83a]Rnase A
authors D.J.Boerema, V.A.Tereshko, J.L.Zhang, C.He, S.B.H.Kent
compound source
Molecule: Ribonuclease Pancreatic
Chain: A, B, C, D
Synonym: Rnase 1, Rnase A
Ec: 3.1.27.5
Engineered: Yes
Mutation: Yes
 Synthetic: Yes
Other_details: Combined Solid Phase Peptide Synthesis And N Chemical Ligation Chemistries.
symmetry Space Group: P 1
R_factor 0.229 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.578 50.534 62.863 85.26 74.31 82.70
method X-Ray Diffractionresolution 2.30 Å
ligand XX1 enzyme Hydrolase E.C.3.1.27.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • ribonuclease A activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2oqf.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (2oqf.pdb2.gz) 20 Kb
  • Biological Unit Coordinates (2oqf.pdb3.gz) 19 Kb
  • Biological Unit Coordinates (2oqf.pdb4.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 2OQF
  • CSU: Contacts of Structural Units for 2OQF
  • Likely Quarternary Molecular Structure file(s) for 2OQF
  • Structure Factors (140 Kb)
  • Retrieve 2OQF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OQF from S2C, [Save to disk]
  • Re-refined 2oqf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OQF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OQF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OQF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oqf_B] [2oqf] [2oqf_C] [2oqf_D] [2oqf_A]
  • SWISS-PROT database: [P61823]
  • Domain organization of [RNAS1_BOVIN] by SWISSPFAM
  • Domain found in 2OQF: [RNAse_Pc ] by SMART
    • Other resources with information on 2OQF
  • Community annotation for 2OQF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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