2OQG Transcription date Jan 31, 2007
title Arsr-Like Transcriptional Regulator From Rhodococcus Sp. Rha
authors Y.Kim, X.Xu, H.Zheng, A.Edwards, A.Savchenko, A.Joachimiak, Midwes For Structural Genomics (Mcsg)
compound source
Molecule: Possible Transcriptional Regulator, Arsr Family P
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Rhodococcus Sp.
Organism_taxid: 101510
Strain: Rha1
Gene: Rha1_ro04214
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified P11
symmetry Space Group: P 1 21 1
R_factor 0.188 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.872 57.494 101.103 90.00 96.54 90.00
method X-Ray Diffractionresolution 1.54 Å
ligand ACY, MSE enzyme
Gene RHA1
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (2oqg.pdb1.gz) 176 Kb
  • LPC: Ligand-Protein Contacts for 2OQG
  • CSU: Contacts of Structural Units for 2OQG
  • Likely Quarternary Molecular Structure file(s) for 2OQG
  • Structure Factors (1014 Kb)
  • Retrieve 2OQG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OQG from S2C, [Save to disk]
  • Re-refined 2oqg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OQG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OQG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OQG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oqg_B] [2oqg_C] [2oqg_A] [2oqg_D] [2oqg]
  • SWISS-PROT database: [Q0S8Y1]
  • Domain organization of [Q0S8Y1_RHOSR] by SWISSPFAM
  • Domain found in 2OQG: [HTH_ARSR ] by SMART
    • Other resources with information on 2OQG
  • Community annotation for 2OQG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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