2OQM Crystal structure of a dinb family member protein (sden_0562) from shewanella denitrificans at 1.83 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.83
ligand CL, EDO, FMT, MSE enzyme
Gene SDEN ; YP
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (2oqm.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (2oqm.pdb2.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 2OQM
  • CSU: Contacts of Structural Units for 2OQM
  • Likely Quarternary Molecular Structure file(s) for 2OQM
  • Structure Factors (7016 Kb)
  • Retrieve 2OQM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OQM from S2C, [Save to disk]
  • Re-refined 2oqm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OQM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OQM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oqm_B] [2oqm_D] [2oqm_C] [2oqm_A] [2oqm]
  • SWISS-PROT database: [Q12RS4]
  • Domain organization of [Q12RS4_SHEDO] by SWISSPFAM
  • Other resources with information on 2OQM
  • Community annotation for 2OQM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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