2OQO	Transferase	date	Jan 31, 2007
title	Crystal Structure Of A Peptidoglycan Glycosyltransferase Fro A Pbp: Insight Into Bacterial Cell Wall Synthesis
authors	Y.Yuan, P.Sliz, S.Walker
compound		source
Molecule: Penicillin-Binding Protein 1a (Pbp-1a) (Pbp1a) Chain: A Fragment: Glycosyltransferase Domain Ec: 2.4.2.- Engineered: Yes		Organism_scientific: Aquifex Aeolicus Organism_taxid: 224324 Strain: Vf5 Gene: Mrca, Pona Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet48(B)
symmetry	Space Group: I 2 2 2	R_factor 0.218 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.817 100.305 104.012 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CPS, EPE	enzyme	Transferase E.C.2.4.2 BRENDA
Primary reference	Crystal structure of a peptidoglycan glycosyltransferase suggests a model for processive glycan chain synthesis., Yuan Y, Barrett D, Zhang Y, Kahne D, Sliz P, Walker S, Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5348-53. Epub 2007 Mar 8. PMID:17360321

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk] Biological Unit Coordinates (2oqo.pdb1.gz) 64 Kb LPC: Ligand-Protein Contacts for 2OQO CSU: Contacts of Structural Units for 2OQO Likely Quarternary Molecular Structure file(s) for 2OQO Structure Factors (150 Kb) Retrieve 2OQO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OQO from S2C, [Save to disk] Re-refined 2oqo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OQO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OQO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OQO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oqo_A] [2oqo] SWISS-PROT database: [O66874] Domain organization of [PBPA_AQUAE] by SWISSPFAM

Other resources with information on 2OQO

Community annotation for 2OQO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---