2OUG Transcription date Feb 10, 2007
title Crystal Structure Of The Rfah Transcription Factor At 2.1a R
authors D.G.Vassylyev, M.N.Vassylyeva, V.Svetlov, I.Artsimovitch
compound source
Molecule: Transcriptional Activator Rfah
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rfah, Hlyt, Sfrb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (Lambdade3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvs12
symmetry Space Group: P 65
R_factor 0.238 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.149 45.149 600.163 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis for converting a general transcription factor into an operon-specific virulence regulator., Belogurov GA, Vassylyeva MN, Svetlov V, Klyuyev S, Grishin NV, Vassylyev DG, Artsimovitch I, Mol Cell. 2007 Apr 13;26(1):117-29. PMID:17434131
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (2oug.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (2oug.pdb2.gz) 26 Kb
  • Biological Unit Coordinates (2oug.pdb3.gz) 27 Kb
  • Biological Unit Coordinates (2oug.pdb4.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2OUG
  • Likely Quarternary Molecular Structure file(s) for 2OUG
  • Structure Factors (359 Kb)
  • Retrieve 2OUG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OUG from S2C, [Save to disk]
  • Re-refined 2oug structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OUG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OUG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OUG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oug_D] [2oug_C] [2oug_B] [2oug_A] [2oug]
  • SWISS-PROT database: [P0AFW0]
  • Domain organization of [RFAH_ECOLI] by SWISSPFAM
  • Domains found in 2OUG: [KOW] [NGN ] by SMART
    • Other resources with information on 2OUG
  • Community annotation for 2OUG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science