2OWB Transferase date Feb 15, 2007
title Structure Of The Catalytic Domain Of Human Polo-Like Kinase
authors Y.H.Ding, M.Kothe, D.Kohls, S.Low
compound source
Molecule: Serinethreonine-Protein Kinase Plk1
Chain: A
Fragment: Kinase Domain (Residues 13-345)
Synonym: Polo-Like Kinase 1, Plk-1, Serinethreonine-Protei 13, Stpk13;
Ec: 2.7.11.21
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plk1, Plk
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf21
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 32 2 1
R_factor 0.203 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.931 66.931 153.590 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand 626, ACT, ZN enzyme Transferase E.C.2.7.11.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the catalytic domain of human polo-like kinase 1., Kothe M, Kohls D, Low S, Coli R, Cheng AC, Jacques SL, Johnson TL, Lewis C, Loh C, Nonomiya J, Sheils AL, Verdries KA, Wynn TA, Kuhn C, Ding YH, Biochemistry. 2007 May 22;46(20):5960-71. Epub 2007 Apr 27. PMID:17461553
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2owb.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (2owb.pdb2.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 2OWB
  • CSU: Contacts of Structural Units for 2OWB
  • Likely Quarternary Molecular Structure file(s) for 2OWB
  • Structure Factors (371 Kb)
  • Retrieve 2OWB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OWB from S2C, [Save to disk]
  • Re-refined 2owb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OWB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OWB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OWB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2owb] [2owb_A]
  • SWISS-PROT database: [P53350]
  • Domain organization of [PLK1_HUMAN] by SWISSPFAM
  • Domain found in 2OWB: [S_TKc ] by SMART
  • Other resources with information on 2OWB
  • Community annotation for 2OWB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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