2OZ8 Structural Genomics, Unknown Function date Feb 25, 2007
title Crystal Structure Of Putative Mandelate Racemase From Mesorh Loti
authors J.B.Bonanno, J.Freeman, K.T.Bain, B.Wu, V.Sridhar, D.Smith, S.Wass J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: Mll7089 Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Mesorhizobium Loti
Organism_taxid: 266835
Strain: Maff303099
Gene: Mll7089
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
Expression_system_plasmid: Modified Pet26
symmetry Space Group: P 4 21 2
R_factor 0.174 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.176 160.176 82.560 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.48 Å
ligand SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (2oz8.pdb1.gz) 490 Kb
  • LPC: Ligand-Protein Contacts for 2OZ8
  • CSU: Contacts of Structural Units for 2OZ8
  • Likely Quarternary Molecular Structure file(s) for 2OZ8
  • Structure Factors (304 Kb)
  • Retrieve 2OZ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OZ8 from S2C, [Save to disk]
  • Re-refined 2oz8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OZ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OZ8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OZ8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oz8_B] [2oz8] [2oz8_A]
  • SWISS-PROT database: [Q987E0]
  • Domain organization of [Q987E0_RHILO] by SWISSPFAM
  • Domain found in 2OZ8: [MR_MLE ] by SMART
    • Other resources with information on 2OZ8
  • Community annotation for 2OZ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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