2P0M Oxidoreductase date Feb 28, 2007
title Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
authors J.Choi, J.K.Chon, S.Kim, W.Shin
compound source
Molecule: Arachidonate 15-Lipoxygenase
Chain: A, B
Synonym: 15s-Lipoxygenase, Omega-6 Lipoxygenase, Erythroid Specific 15-Lipoxygenase, 15-Lox;
Ec: 1.13.11.33
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
symmetry Space Group: H 3
R_factor 0.193 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
198.900 198.900 136.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand FE2, RS7 enzyme Oxidoreductase E.C.1.13.11.33 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceConformational flexibility in mammalian 15S-lipoxygenase: Reinterpretation of the crystallographic data., Choi J, Chon JK, Kim S, Shin W, Proteins. 2007 Sep 10;. PMID:17847087
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (2p0m.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (2p0m.pdb2.gz) 109 Kb
  • Biological Unit Coordinates (2p0m.pdb3.gz) 215 Kb
  • LPC: Ligand-Protein Contacts for 2P0M
  • CSU: Contacts of Structural Units for 2P0M
  • Likely Quarternary Molecular Structure file(s) for 2P0M
  • Structure Factors (525 Kb)
  • Retrieve 2P0M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P0M from S2C, [Save to disk]
  • Re-refined 2p0m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2P0M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2P0M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P0M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p0m] [2p0m_B] [2p0m_A]
  • SWISS-PROT database: [P12530]
  • Domain organization of [LOX15_RABIT] by SWISSPFAM
  • Domain found in 2P0M: [LH2 ] by SMART
    • Other resources with information on 2P0M
  • Community annotation for 2P0M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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