2P3U Blood Clotting date Mar 09, 2007
title Crystal Structure Of Human Factor Xa Complexed With 3-Chloro Chloro-2-{[(5-Chloropyridin-2-Yl)Amino]Carbonyl}-6-Methoxyp [(1-Methyl-1h-Imidazol-2-Yl)Methyl]Thiophene-2-Carboxamide 320663}
authors M.Adler, M.Whitlow
compound source
Molecule: Coagulation Factor X
Chain: A
Fragment: Egf-Like 2 Domain
Synonym: Stuart Factor, Stuart-Prower Factor
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Extracted From Blood

Molecule: Coagulation Factor X
Chain: B
Fragment: Catalytic Domain
Synonym: Stuart Factor, Stuart-Prower Factor
Ec: 3.4.21.6

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.014 71.717 78.651 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.62 Å
ligand 663, CA enzyme Hydrolase E.C.3.4.21.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2p3u.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 2P3U
  • CSU: Contacts of Structural Units for 2P3U
  • Likely Quarternary Molecular Structure file(s) for 2P3U
  • Structure Factors (308 Kb)
  • Retrieve 2P3U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P3U from S2C, [Save to disk]
  • Re-refined 2p3u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2P3U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P3U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P3U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p3u] [2p3u_B] [2p3u_A]
  • SWISS-PROT database: [P00742]
  • Domain organization of [FA10_HUMAN] by SWISSPFAM
  • Domains found in 2P3U: [EGF] [Tryp_SPc ] by SMART
  • Other resources with information on 2P3U
  • Community annotation for 2P3U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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