2P6G Transferase date Mar 18, 2007
title Crystal Structures Of Saccharomyces Cerevisiae N-Myristoyltr With Bound Myristoyl-Coa And Inhibitors
authors J.Wu, J.Ding
compound source
Molecule: Glycylpeptide N-Tetradecanoyltransferase
Chain: A, B, C, D, E, F
Synonym: Peptide N-Myristoyltransferase, Myristoyl-Coa:Prot Myristoyltransferase, Nmt, Cell Division Control Protein 72
Ec: 2.3.1.97
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: 850892
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbx3
symmetry Space Group: C 1 2 1
R_factor 0.260 R_Free 0.318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
188.847 151.301 134.195 90.00 107.64 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand 3LP, MYA enzyme Transferase E.C.2.3.1.97 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structures of Saccharomyces cerevisiae N-myristoyltransferase with bound myristoyl-CoA and inhibitors reveal the functional roles of the N-terminal region., Wu J, Tao Y, Zhang M, Howard M, Gutteridge S, Ding J, J Biol Chem. 2007 May 18;. PMID:17513302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (793 Kb) [Save to disk]
  • Biological Unit Coordinates (2p6g.pdb1.gz) 135 Kb
  • Biological Unit Coordinates (2p6g.pdb2.gz) 135 Kb
  • Biological Unit Coordinates (2p6g.pdb3.gz) 136 Kb
  • Biological Unit Coordinates (2p6g.pdb4.gz) 136 Kb
  • Biological Unit Coordinates (2p6g.pdb5.gz) 135 Kb
  • Biological Unit Coordinates (2p6g.pdb6.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 2P6G
  • CSU: Contacts of Structural Units for 2P6G
  • Likely Quarternary Molecular Structure file(s) for 2P6G
  • Structure Factors (1235 Kb)
  • Retrieve 2P6G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P6G from S2C, [Save to disk]
  • Re-refined 2p6g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2P6G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P6G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P6G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p6g_D] [2p6g_C] [2p6g_F] [2p6g_E] [2p6g_A] [2p6g] [2p6g_B]
  • SWISS-PROT database: [P14743]
  • Domain organization of [NMT_YEAST] by SWISSPFAM
  • Other resources with information on 2P6G
  • Community annotation for 2P6G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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