2PE1	Transferase	date	Apr 01, 2007
title	Crystal Structure Of Human Phosphoinositide-Dependent Protei (Pdk1) {2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,3-Di Indol-5-Yl}-Urea {Bx-517} Complex
authors	M.Whitlow, M.Adler
compound		source
Molecule: 3-Phosphoinositide-Dependent Protein Kinase 1 Chain: A Fragment: Kinase Domain Synonym: Hpdk1 Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdpk1, Pdk1 Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469 Expression_system_strain: Sf-21 Cells Expression_system_vector_type: Pbluebac4.5 Expression_system_plasmid: Pdk1-Catpbb4.5
symmetry	Space Group: P 32 2 1	R_factor 0.222 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 125.234 125.234 47.696 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.14 Å
ligand	517, GOL, SEP, SO4 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Indolinone based phosphoinositide-dependent kinase-1 (PDK1) inhibitors. Part 1: Design, synthesis and biological activity., Islam I, Bryant J, Chou YL, Kochanny MJ, Lee W, Phillips GB, Yu H, Adler M, Whitlow M, Ho E, Lentz D, Polokoff MA, Subramanyam B, Wu JM, Zhu D, Feldman RI, Arnaiz DO, Bioorg Med Chem Lett. 2007 Apr 27;. PMID:17531483

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (2pe1.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 2PE1 CSU: Contacts of Structural Units for 2PE1 Likely Quarternary Molecular Structure file(s) for 2PE1 Structure Factors (149 Kb) Retrieve 2PE1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PE1 from S2C, [Save to disk] Re-refined 2pe1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PE1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PE1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PE1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pe1] [2pe1_A] SWISS-PROT database: [O15530] Domain organization of [PDPK1_HUMAN] by SWISSPFAM Domain found in 2PE1: [S_TKc ] by SMART

Other resources with information on 2PE1

Community annotation for 2PE1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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