2PHG	Transcription	date	Apr 11, 2007
title	Model For Vp16 Binding To Tfiib
authors	H.R.A.Jonker, R.W.Wechselberger, R.Boelens, G.E.Folkers, R.Kapte
compound		source
Molecule: Transcription Initiation Factor Iib Chain: A Fragment: C-Terminal Core Domain Synonym: General Transcription Factor Tfiib, S300-II Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gtf2b, Tf2b, Tfiib Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Alpha Trans-Inducing Protein Chain: B Fragment: Part Of Activation Domain Synonym: Vmw65, Icp25, Vp16 Protein, Alpha- Tif Engineered: Yes		Organism_scientific: Herpes Simplex Virus (Type 1 Strain Organism_taxid: 10299 Strain: 17 Gene: Ul48 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid
method	Solution NMR
Gene Ontology	Chain Function Process Component A
Primary reference	Structural properties of the promiscuous VP16 activation domain., Jonker HR, Wechselberger RW, Boelens R, Folkers GE, Kaptein R, Biochemistry. 2005 Jan 25;44(3):827-39. PMID:15654739

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (306 Kb) [Save to disk] Biological Unit Coordinates (2phg.pdb1.gz) 30 Kb CSU: Contacts of Structural Units for 2PHG Retrieve 2PHG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PHG from S2C, [Save to disk]

View 2PHG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PHG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PHG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2phg] [2phg_A] [2phg_B] SWISS-PROT database: [Q00403] [P06492] Domain organization of [TF2B_HUMAN] [VP16_HHV11] by SWISSPFAM Domain found in 2PHG: [CYCLIN ] by SMART

Other resources with information on 2PHG

Community annotation for 2PHG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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