2PJT	Hydrolase	date	Apr 16, 2007
title	Crystal Structure Of The Catalytic Domain Of Mmp-13 Complexe Way-344
authors	Z.Xu, A.Huang, F.Lovering, J.I.Levin, L.Mosyak
compound		source
Molecule: Collagenase 3 Chain: A, B, C, D Fragment: Catalytic Domain: Residues 104-268 Synonym: Matrix Metalloproteinase-13, Mmp-13 Ec: 3.4.24.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mmp13 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
symmetry	Space Group: C 1 2 1	R_factor 0.212 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 135.352 35.789 139.405 90.00 108.94 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	347, CA, ZN BindingDB	enzyme	Hydrolase E.C.3.4.24 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure-based design of TACE selective inhibitors: manipulations in the S1'-S3' pocket., Huang A, Joseph-McCarthy D, Lovering F, Sun L, Wang W, Xu W, Zhu Y, Cui J, Zhang Y, Levin JI, Bioorg Med Chem. 2007 Sep 15;15(18):6170-81. Epub 2007 Jun 20. PMID:17606376

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk] Biological Unit Coordinates (2pjt.pdb1.gz) 30 Kb Biological Unit Coordinates (2pjt.pdb2.gz) 30 Kb Biological Unit Coordinates (2pjt.pdb3.gz) 29 Kb Biological Unit Coordinates (2pjt.pdb4.gz) 30 Kb LPC: Ligand-Protein Contacts for 2PJT CSU: Contacts of Structural Units for 2PJT Likely Quarternary Molecular Structure file(s) for 2PJT Retrieve 2PJT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PJT from S2C, [Save to disk]

View 2PJT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PJT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PJT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pjt] [2pjt_A] [2pjt_B] [2pjt_C] [2pjt_D] SWISS-PROT database: [P45452] Domain organization of [MMP13_HUMAN] by SWISSPFAM Domain found in 2PJT: [ZnMc ] by SMART

Other resources with information on 2PJT

Community annotation for 2PJT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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