2PQN Apoptosis date May 02, 2007
title Crystal Structure Of Yeast Fis1 Complexed With A Fragment Of Mdv1
authors Y.Zhang, D.C.Chan
compound source
Molecule: Mitochondria Fission 1 Protein
Chain: A
Fragment: Cytosolic Portion
Synonym: Mitochondrial Division Protein 2
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Fis1, Mdv2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbb75

Molecule: Mitochondrial Division Protein 1
Chain: B
Fragment: N-Terminal Domain
Synonym: Mitochondria Fission 2 Protein
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mdv1, Fis2, Gag3, Net2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 2
R_factor 0.198 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.172 57.388 69.804 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for recruitment of mitochondrial fission complexes by Fis1., Zhang Y, Chan DC, Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18526-30. Epub 2007 Nov 12. PMID:17998537
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (2pqn.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 2PQN
  • Likely Quarternary Molecular Structure file(s) for 2PQN
  • Structure Factors (108 Kb)
  • Retrieve 2PQN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PQN from S2C, [Save to disk]
  • Re-refined 2pqn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PQN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PQN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PQN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pqn_B] [2pqn] [2pqn_A]
  • SWISS-PROT database: [P40515] [P47025]
  • Domain organization of [FIS1_YEAST] [MDV1_YEAST] by SWISSPFAM
  • Other resources with information on 2PQN
  • Community annotation for 2PQN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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