2PQR	Apoptosis	date	May 02, 2007
title	Crystal Structure Of Yeast Fis1 Complexed With A Fragment Of Caf4
authors	Y.Zhang, D.C.Chan
compound		source
Molecule: Mitochondria Fission 1 Protein Chain: A, B Fragment: Cytoplasmic Portion Synonym: Mitochondrial Division Protein 2 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Fis1, Mdv2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbb75
Molecule: Wd Repeat Protein Ykr036c Chain: C, D Fragment: N-Terminal Domain Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Caf4 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 1 21 1	R_factor 0.208 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.408 46.948 64.468 90.00 99.21 90.00
method	X-Ray Diffraction	resolution	1.88 Å
ligand	AU	enzyme
note	2PQR is a representative structure
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Structural basis for recruitment of mitochondrial fission complexes by Fis1., Zhang Y, Chan DC, Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18526-30. Epub 2007 Nov 12. PMID:17998537

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (2pqr.pdb1.gz) 24 Kb Biological Unit Coordinates (2pqr.pdb2.gz) 30 Kb LPC: Ligand-Protein Contacts for 2PQR CSU: Contacts of Structural Units for 2PQR Likely Quarternary Molecular Structure file(s) for 2PQR Structure Factors (348 Kb) Retrieve 2PQR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PQR from S2C, [Save to disk] Re-refined 2pqr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PQR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PQR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PQR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pqr_A] [2pqr_C] [2pqr_D] [2pqr] [2pqr_B] SWISS-PROT database: [P36130] [P40515] Domain organization of [CAF4_YEAST] [FIS1_YEAST] by SWISSPFAM

Other resources with information on 2PQR

Community annotation for 2PQR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---