2PV6 Viral Protein date May 09, 2007
title Hiv-1 Gp41 Membrane Proximal Ectodomain Region Peptide In Dp
authors Z.Y.J.Sun, K.J.Oh, M.Kim, E.L.Reinherz, G.Wagner
compound source
Molecule: Envelope Glycoprotein
Chain: A
Fragment: Residues 662-683
Synonym: Env Polyprotein
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Strain: Hxb2
Gene: Env
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a
methodSolution NMR
Primary referenceHIV-1 broadly neutralizing antibody extracts its epitope from a kinked gp41 ectodomain region on the viral membrane., Sun ZY, Oh KJ, Kim M, Yu J, Brusic V, Song L, Qiao Z, Wang JH, Wagner G, Reinherz EL, Immunity. 2008 Jan;28(1):52-63. PMID:18191596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (2pv6.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 2PV6
  • Retrieve 2PV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PV6 from S2C, [Save to disk]
    • View 2PV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PV6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PV6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pv6] [2pv6_A]
  • SWISS-PROT database: [P04578]
  • Belongs to the human immunodeficiency virus type 1 (hiv-1) fusion peptide (hiv-fp) family according to TCDB.
  • Domain organization of [ENV_HV1H2] by SWISSPFAM
    • Other resources with information on 2PV6
  • Community annotation for 2PV6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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