2Q5P	Ligand Binding Protein	date	Jun 01, 2007
title	Crystal Structure Of Ppargamma Bound To Partial Agonist Mrl2
authors	J.B.Bruning, K.W.Nettles
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain Synonym: Ppar-Gamma Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmcsg19
symmetry	Space Group: C 1 2 1	R_factor 0.206 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.355 61.452 117.947 90.00 102.42 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	241 BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Partial Agonists Activate PPARgamma Using a Helix 12 Independent Mechanism., Bruning JB, Chalmers MJ, Prasad S, Busby SA, Kamenecka TM, He Y, Nettles KW, Griffin PR, Structure. 2007 Oct;15(10):1258-71. PMID:17937915

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (2q5p.pdb1.gz) 84 Kb LPC: Ligand-Protein Contacts for 2Q5P CSU: Contacts of Structural Units for 2Q5P Likely Quarternary Molecular Structure file(s) for 2Q5P Structure Factors (207 Kb) Retrieve 2Q5P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Q5P from S2C, [Save to disk] Re-refined 2q5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Q5P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Q5P

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Q5P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2q5p_B] [2q5p_A] [2q5p] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 2Q5P: [HOLI ] by SMART

Other resources with information on 2Q5P

Community annotation for 2Q5P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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